Amarasinghe, Gaya: search on Z-Library

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1

Filoviral Immune Evasion Mechanisms

Ramanan, Parameshwaran, Shabman, Reed S., Brown, Craig S., Amarasinghe, Gaya K., Basler, Christopher F., Leung, Daisy W.

Journal:

Year:

2011

Language:

english

File:

PDF, 642 KB

english, 2011

2

Structural insights into RNA recognition and activation of RIG-I-like receptors

Daisy W Leung, Gaya K Amarasinghe

Journal:

Current Opinion in Structural Biology

Year:

2012

Language:

english

File:

PDF, 1.89 MB

english, 2012

3

Implementation of Objective PASC-Derived Taxon Demarcation Criteria for Official Classification of Filoviruses

Bào, Yīmíng, Amarasinghe, Gaya, Basler, Christopher, Bavari, Sina, Bukreyev, Alexander, Chandran, Kartik, Dolnik, Olga, Dye, John, Ebihara, Hideki, Formenty, Pierre, Hewson, Roger, Kobinger, Gary, Ler

Journal:

Year:

2017

Language:

english

File:

PDF, 837 KB

english, 2017

4

Structural and Functional Characterization of Reston Ebola Virus VP35 Interferon Inhibitory Domain

Daisy W. Leung, Reed S. Shabman, Mina Farahbakhsh, Kathleen C. Prins, Dominika M. Borek, Tianjiao Wang, Elke Mühlberger, Christopher F. Basler, Gaya K. Amarasinghe

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.33 MB

english, 2010

5

Aptamers in Virology: Recent Advances and Challenges

Binning, Jennifer M., Leung, Daisy W., Amarasinghe, Gaya K.

Journal:

Frontiers in Microbiology

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

6

Conservation of Structure and Immune Antagonist Functions of Filoviral VP35 Homologs Present in Microbat Genomes

Edwards, Megan R., Liu, Hejun, Shabman, Reed S., Ginell, Garrett M., Luthra, Priya, Ramanan, Parmeshwaran, Keefe, Lisa J., Köllner, Bernd, Amarasinghe, Gaya K., Taylor, Derek J., Leung, Daisy W., Basl

Journal:

Year:

2018

Language:

english

File:

PDF, 1.88 MB

english, 2018

7

Taxonomy of the order Mononegavirales: update 2019

Amarasinghe, Gaya K., Ayllón, María A., Bào, Yīmíng, Basler, Christopher F., Bavari, Sina, Blasdell, Kim R., Briese, Thomas, Brown, Paul A., Bukreyev, Alexander, Balkema-Buschmann, Anne, Buchholz, Urs

Journal:

Archives of Virology

Year:

2019

Language:

english

File:

PDF, 804 KB

english, 2019

8

Human IFIT3 Modulates IFIT1 RNA Binding Specificity and Protein Stability

Johnson, Britney, VanBlargan, Laura A., Xu, Wei, White, James P., Shan, Chao, Shi, Pei-Yong, Zhang, Rong, Adhikari, Jagat, Gross, Michael L., Leung, Daisy W., Diamond, Michael S., Amarasinghe, Gaya K.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.04 MB

english, 2018

9

Evasion of Interferon Responses by Ebola and Marburg Viruses

Basler, Christopher F., Amarasinghe, Gaya K.

Journal:

Journal of Interferon & Cytokine Research

Year:

2009

Language:

english

File:

PDF, 391 KB

english, 2009

10

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the Ψ-RNA packaging signal. implications for genome recognition

Gaya K Amarasinghe, Roberto N De Guzman, Ryan B Turner, Kalola J Chancellor, Zeng Rong Wu, Michael F Summers

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 1.03 MB

english, 2000

11

Dynamic Origins of Interdomain Cooperativity in the Vav1 Proto-Oncoprotein

Rosen, Michael K., Li, Pilong, Martins, Ilidio R.S., Amarasinghe, Gaya K., Yu, Bingke, Umetani, Junko

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 36 KB

english, 2009

12

The Marburg Virus VP24 Protein Interacts with Keap1 to Activate the Cytoprotective Antioxidant Response Pathway

Edwards, Megan R., Johnson, Britney, Mire, Chad E., Xu, Wei, Shabman, Reed S., Speller, Lauren N., Leung, Daisy W., Geisbert, Thomas W., Amarasinghe, Gaya K., Basler, Christopher F.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

13

Ebola virus VP30 and nucleoprotein interactions modulate viral RNA synthesis

Xu, Wei, Luthra, Priya, Wu, Chao, Batra, Jyoti, Leung, Daisy W., Basler, Christopher F., Amarasinghe, Gaya K.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.02 MB

english, 2017

14

Molecular mechanisms of viral inhibitors of RIG-I-like receptors

Daisy W. Leung, Christopher F. Basler, Gaya K. Amarasinghe

Journal:

Trends in Microbiology

Year:

2012

Language:

english

File:

PDF, 4.40 MB

english, 2012

15

When your cap matters: structural insights into self vs non-self recognition of 5′ RNA by immunomodulatory host proteins

Leung, Daisy W, Amarasinghe, Gaya K

Journal:

Current Opinion in Structural Biology

Year:

2016

Language:

english

File:

PDF, 1.65 MB

english, 2016

16

Applications of parameterized NMR spin systems of small molecules

Dashti, Hesam, Wedell, Jonathan R., Westler, William M., Tonelli, Marco, Aceti, David John, Amarasinghe, Gaya K., Markley, John L., Eghbalnia, Hamid R.

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 394 KB

english, 2018

17

Structural and Energetic Mechanisms of Cooperative Autoinhibition and Activation of Vav1

Bingke Yu, Ilídio R.S. Martins, Pilong Li, Gaya K. Amarasinghe, Junko Umetani, Martin E. Fernandez-Zapico, Daniel D. Billadeau, Mischa Machius, Diana R. Tomchick, Michael K. Rosen

Journal:

Year:

2010

Language:

english

File:

PDF, 869 KB

english, 2010

18

Ebola Virus Replication Stands Out

Wang, Wenjie, Wu, Chao, Amarasinghe, Gaya K., Leung, Daisy W.

Journal:

Trends in Microbiology

Year:

2019

Language:

english

File:

PDF, 179 KB

english, 2019

19

Development of RNA Aptamers Targeting Ebola Virus VP35

Binning, Jennifer M., Wang, Tianjiao, Luthra, Priya, Shabman, Reed S., Borek, Dominika M., Liu, Gai, Xu, Wei, Leung, Daisy W., Basler, Christopher F., Amarasinghe, Gaya K.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.10 MB

english, 2013

20

Nucleotide resolution mapping of influenza A virus nucleoprotein-RNA interactions reveals RNA features required for replication

Williams, Graham D., Townsend, Dana, Wylie, Kristine M., Kim, Preston J., Amarasinghe, Gaya K., Kutluay, Sebla B., Boon, Adrianus C. M.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.22 MB

english, 2018

21

Structure-Function Analysis of the Curli Accessory Protein CsgE Defines Surfaces Essential for Coordinating Amyloid Fiber Formation

Klein, Roger D., Shu, Qin, Cusumano, Zachary T., Nagamatsu, Kanna, Gualberto, Nathaniel C., Lynch, Aaron J. L., Wu, Chao, Wang, Wenjie, Jain, Neha, Pinkner, Jerome S., Amarasinghe, Gaya K., Hultgren,

Journal:

Year:

2018

Language:

english

File:

PDF, 3.00 MB

english, 2018

22

Backbone resonance assignments and secondary structure of Ebola nucleoprotein 600–739 construct

Lee, Woonghee, Tonelli, Marco, Wu, Chao, Aceti, David J., Amarasinghe, Gaya K., Markley, John L.

Journal:

Biomolecular NMR Assignments

Year:

2019

Language:

english

File:

PDF, 2.22 MB

english, 2019

23

Ebola Virus VP35 Interaction with Dynein LC8 Regulates Viral RNA Synthesis

Luthra, Priya, Jordan, David S., Leung, Daisy W., Amarasinghe, Gaya K., Basler, Christopher F., Lyles, D. S.

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 779 KB

english, 2015

24

Molecular Mechanisms of Innate Immune Inhibition by Non-Segmented Negative-Sense RNA Viruses

Chatterjee, Srirupa, Basler, Christopher F., Amarasinghe, Gaya K., Leung, Daisy W.

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 2.93 MB

english, 2016

25

Stem-loop SL4 of the HIV-1 Ψ RNA packaging signal exhibits weak affinity for the nucleocapsid protein. structural studies and implications for genome recognition

Gaya K. Amarasinghe, Jing Zhou, Matthew Miskimon, Kalola J. Chancellor, Jasmine A. McDonald, Akida G. Matthews, Robyn R. Miller, Michael D. Rouse, Michael F. Summers

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 358 KB

english, 2001

26

A Calcium-Fortified Viral Matrix Protein

Amarasinghe, Gaya K., Dutch, Rebecca Ellis

Journal:

Year:

2014

Language:

english

File:

PDF, 253 KB

english, 2014

27

VP24-Karyopherin Alpha Binding Affinities Differ between Ebolavirus Species, Influencing Interferon Inhibition and VP24 Stability

Schwarz, Toni M., Edwards, Megan R., Diederichs, Audrey, Alinger, Joshua B., Leung, Daisy W., Amarasinghe, Gaya K., Basler, Christopher F., Lyles, Douglas S.

Journal:

Journal of Virology

Year:

2017

Language:

english

File:

PDF, 4.16 MB

english, 2017

28

Allosteric Coupling of CARMIL and V-1 Binding to Capping Protein Revealed by Hydrogen-Deuterium Exchange

Johnson, Britney, McConnell, Patrick, Kozlov, Alex G., Mekel, Marlene, Lohman, Timothy M., Gross, Michael L., Amarasinghe, Gaya K., Cooper, John A.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.16 MB

english, 2018

29

A Sensitive in Vitro High-Throughput Screen To Identify Pan-filoviral Replication Inhibitors Targeting the VP35–NP Interface

Liu, Gai, Nash, Peter J., Johnson, Britney, Pietzsch, Colette, Ilagan, Ma. Xenia G., Bukreyev, Alexander, Basler, Christopher F., Bowlin, Terry L., Moir, Donald T., Leung, Daisy W., Amarasinghe, Gaya

Journal:

ACS Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 4.14 MB

english, 2017

30

Taxonomy of the order Mononegavirales: update 2017

Amarasinghe, Gaya K., Bào, Yīmíng, Basler, Christopher F., Bavari, Sina, Beer, Martin, Bejerman, Nicolás, Blasdell, Kim R., Bochnowski, Alisa, Briese, Thomas, Bukreyev, Alexander, Calisher, Charles H.

Journal:

Archives of Virology

Year:

2017

Language:

english

File:

PDF, 473 KB

english, 2017

31

Virus and host interactions critical for filoviral RNA synthesis as therapeutic targets

Basler, Christopher F., Krogan, Nevan J., Leung, Daisy W., Amarasinghe, Gaya K.

Journal:

Antiviral Research

Year:

2018

Language:

english

File:

PDF, 8.13 MB

english, 2018

32

Small molecule compounds that inhibit antioxidant response gene expression in an inducer-dependent manner

Edwards, Megan R., Liu, Gai, De, Sampriti, Sourimant, Julien, Pietzsch, Colette, Johnson, Britney, Amarasinghe, Gaya K., Leung, Daisy W., Bukreyev, Alexander, Plemper, Richard K., Aron, Zachary, Bowli

Journal:

ACS Infectious Diseases

Year:

2020

Language:

english

File:

PDF, 62.03 MB

english, 2020

33

Acidic Region Tyrosines Provide Access Points for Allosteric Activation of the Autoinhibited Vav1 Dbl Homology Domain †

Amarasinghe, Gaya K., Rosen, Michael K.

Journal:

Year:

2005

Language:

english

File:

PDF, 314 KB

english, 2005

34

Taxonomy of the order Mononegavirales: update 2018

Amarasinghe, Gaya K., Aréchiga Ceballos, Nidia G., Banyard, Ashley C., Basler, Christopher F., Bavari, Sina, Bennett, Andrew J., Blasdell, Kim R., Briese, Thomas, Bukreyev, Alexander, Caì, Yíngyún, Ca

Journal:

Archives of Virology

Year:

2018

Language:

english

File:

PDF, 951 KB

english, 2018

35

Role of Antibodies in Protection Against Ebola Virus in Nonhuman Primates Immunized With Three Vaccine Platforms

Warfield, Kelly L, Howell, Katie A, Vu, Hong, Geisbert, Joan, Wong, Gary, Shulenin, Sergey, Sproule, Stephanie, Holtsberg, Frederick W, Leung, Daisy W, Amarasinghe, Gaya K, Swenson, Dana L, Bavari, Si

Journal:

The Journal of Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 319 KB

english, 2018

36

Defining a Two-pronged Structural Model for PB1 (Phox/Bem1p) Domain Interaction in Plant Auxin Responses

Korasick, David A., Chatterjee, Srirupa, Tonelli, Marco, Dashti, Hesam, Lee, Soon Goo, Westfall, Corey S., Fulton, D. Bruce, Andreotti, Amy H., Amarasinghe, Gaya K., Strader, Lucia C., Jez, Joseph M.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 7.99 MB

english, 2015

37

Sudan Ebolavirus VP35-NP Crystal Structure Reveals a Potential Target for Pan-Filovirus Treatment

Landeras-Bueno, Sara, Oda, Shun-ichiro, Norris, Michael J., Li Salie, Zhe, Guenaga, Javier, Wyatt, Richard T., Saphire, Erica Ollmann, Amarasinghe, Gaya, Smithgall, Thomas E.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.77 MB

english, 2019

38

Dimerization Controls Marburg Virus VP24-dependent Modulation of Host Antioxidative Stress Responses

Johnson, Britney, Li, Jing, Adhikari, Jagat, Edwards, Megan R., Zhang, Hao, Schwarz, Toni, Leung, Daisy W., Basler, Christopher F., Gross, Michael L., Amarasinghe, Gaya K.

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 817 KB

english, 2016

39

Ebolavirus VP35 is a multifunctional virulence factor

Leung, Daisy W., Prins, Kathleen C., Basler, Christopher F., Amarasinghe, Gaya K.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

40

Human and murine IFIT1 do not restrict infection of negative sense RNA viruses of the orthomyxoviridae, bunyaviridae, and filoviridae families

Pinto, Amelia K., Williams, Graham D., Szretter, Kristy J., White, James P., Proença-Módena, José Luiz, Liu, Gai, Olejnik, Judith, Brien, James D., Ebihara, Hideki, Mühlberger, Elke, Amarasinghe, Gaya

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 3.97 MB

english, 2015

41

NMR structure of stem-loop SL2 of the HIV-1 Ψ RNA packaging signal reveals a novel A-U-A base-triple platform

Gaya K Amarasinghe, Roberto N De Guzman, Ryan B Turner, Michael F Summers

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 395 KB

english, 2000

42

Mutual Antagonism between the Ebola Virus VP35 Protein and the RIG-I Activator PACT Determines Infection Outcome

Luthra, Priya, Ramanan, Parameshwaran, Mire, Chad E., Weisend, Carla, Tsuda, Yoshimi, Yen, Benjamin, Liu, Gai, Leung, Daisy W., Geisbert, Thomas W., Ebihara, Hideki, Amarasinghe, Gaya K., Basler, Chri

Journal:

Cell Host & Microbe

Year:

2013

Language:

english

File:

PDF, 977 KB

english, 2013

43

An Upstream Open Reading Frame Modulates Ebola Virus Polymerase Translation and Virus Replication

Shabman, Reed S., Hoenen, Thomas, Groseth, Allison, Jabado, Omar, Binning, Jennifer M., Amarasinghe, Gaya K., Feldmann, Heinz, Basler, Christopher F., Whelan, Sean P. J.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.38 MB

english, 2013

44

Differential Regulation of Interferon Responses by Ebola and Marburg Virus VP35 Proteins

Edwards, Megan R., Liu, Gai, Mire, Chad E., Sureshchandra, Suhas, Luthra, Priya, Yen, Benjamin, Shabman, Reed S., Leung, Daisy W., Messaoudi, Ilhem, Geisbert, Thomas W., Amarasinghe, Gaya K., Basler,

Journal:

Year:

2016

Language:

english

File:

PDF, 1.89 MB

english, 2016

45

Taxonomy of the orderMononegavirales: update 2016

Afonso, Claudio L., Amarasinghe, Gaya K., Bányai, Krisztián, Bào, Yīmíng, Basler, Christopher F., Bavari, Sina, Bejerman, Nicolás, Blasdell, Kim R., Briand, François-Xavier, Briese, Thomas, Bukreyev,

Journal:

Archives of Virology

Year:

2016

Language:

english

File:

PDF, 438 KB

english, 2016

46

Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials

Postler, Thomas S., Clawson, Anna N., Amarasinghe, Gaya K., Basler, Christopher F., Bavari, Sina, Benkő, Mária, Blasdell, Kim R., Briese, Thomas, Buchmeier, Michael J., Bukreyev, Alexander, Calisher,

Journal:

Systematic Biology

Year:

2016

Language:

english

File:

PDF, 425 KB

english, 2016

47

Fragment screening targeting Ebola virus nucleoprotein C-terminal domain identifies lead candidates

Aceti, David J., Ahmed, Hamza, Westler, William M., Wu, Chao, Dashti, Hesam, Tonelli, Marco, Eghbalnia, Hamid, Amarasinghe, Gaya K., Markley, John L.

Journal:

Antiviral Research

Year:

2020

File:

PDF, 1.25 MB

2020

48

Advanced Methods for Accessing Protein Shape-Shifting Present New Therapeutic Opportunities

Knoverek, Catherine R., Amarasinghe, Gaya K., Bowman, Gregory R.

Journal:

Trends in Biochemical Sciences

Year:

2018

Language:

english

File:

PDF, 3.22 MB

english, 2018

49

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Kuhn, Jens H., Adkins, Scott, Alioto, Daniela, Alkhovsky, Sergey V., Amarasinghe, Gaya K., Anthony, Simon J., AvÅ¡iÄ-Å½upanc, Tatjana, AyllÃ³n, MarÃa A., Bahl, Justin, Balkema-Buschmann, Anne, Balli

Journal:

Archives of Virology

Year:

2020

File:

PDF, 1.28 MB

2020

50

Internal dynamics control activation and activity of the autoinhibited Vav DH domain

Li, Pilong, Martins, Ilídio R S, Amarasinghe, Gaya K, Rosen, Michael K

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 529 KB

english, 2008

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